Andrew Perry's Library tagged → View Popular
(web.py)
"web.py is a web framework for python that is as simple as it is powerful. web.py is in the public domain". A barebones simple web application framework for Python. Similar to Sinatra for Ruby, or the "webapp" module used by Google App Engine. I like the way it keeps the code close to the HTTP protocol - the method to handle a GET request is called ... you guessed it ... GET().
App Engine Console
A browser-based "console" which provides an interactive Python session, running as part of your Google App Engine app. Allows you to query the datastore of your application while it is running live using Python statements.
MV3D : Multiverse 3D
Open source virtual world simulation framework written in Python, using Ogre and Twisted.
SUMMON: visualization prototyping and scripting - Matt Rasmussen
"SUMMON is a python extension module that provides rapid prototyping of 2D visualizations."
OpenCV (Open Source Computer Vision library)
"OpenCV (Open Source Computer Vision) is a library of programming functions for real time computer vision."
PyRosetta : Python interface to Rosetta
"PyRosetta is an interactive Python-based interface to the powerful Rosetta molecular modeling suite. It enables users to design their own custom molecular modeling algorithms using Rosetta sampling methods and energy functions.".
The Python Computer Graphics Kit
The Python Computer Graphics Kit is an Open Source software package containing a collection of Python modules, plugins and utilities that are meant to be useful for any domain where you have to deal with 3D data of any kind, be it for visualization, creating photorealistic images, Virtual Reality or even games.
PyMW : Python Master-Worker parallel computing
"PyMW is a Python module for master worker style parallel computing in a variety of environments. Condor, and BOINC."
zenpdb - python analysis of macromolecular structures
ZenPDB is a Python module to process and analyze macromolecular structures, including fast and versatile Cython implementations of accessible surface area (ASA) and distance contact calculations by using kd-trees for nearest neighbour look-up. Macromolecular structures are represented as hierarchically nested python dictionaries, which allows to traverse and manipulate them in a pythonic way and implement structural biology algorithms compactly. It is crystallography-aware and can construct crystal lattices, unit cells and biological units. This module is also useful to establish processing pipelines (PDBML input is also planned).
plone4bio
Plone4bio provides a web-based integrated environment for managing and analyzing biological sequence data. Includes a feature viewer. Backed by BioSQL and Plone.
A simple unix/linux daemon in Python
A Unix system daemon written in Python. Sub-classable.
python(x,y) - Python for Scientists
"Python(x,y) is a free scientific and engineering development software for numerical computations, data analysis and data visualization based on Python programming language, Qt graphical user interfaces (and development framework) and Eclipse integrated development environment."
Treemaker: A key-value data warehouse in Python
Quote: "We have so much memory now that it takes a titanic amount of data to even start hitting the disk. But when you hit that wall, oh boy do you feel it. I happen to be working with sequencing data that's just brushing up against that wall. Annoying. .... I've written myself a key-value store with this in mind. It's the flavour of the month thing to do. "
General Hidden Markov Model (GHMM) Library
"The General Hidden Markov Model library (GHMM) is a freely available LGPL-ed C library implementing efficient data structures and algorithms for basic and extended HMMs. Python and C bindings, XML-based file format, Portable (autoconf, automake, Windows)"
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