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Factor Analysis: Statnotes, from North Carolina State University, Public Administration Program
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- Types of Factoring
- Principal components analysis (PCA): By far the most common form of factor analysis, PCA seeks a linear combination of variables such that the maximum variance is extracted from the variables. It then removes this variance and seeks a second linear combination which explains the maximum proportion of the remaining variance, and so on. This is called the principal axis method and results in orthogonal (uncorrelated) factors. PCA analyzes total (common and unique) variance.
- SPSS procedure: Select Analyze - Data Reduction - Factor - Variables (input variables) - Descriptives - Under Correlation Matrix, check KMO and Anti-image to get overall and individual KMO statistics - Extraction - Method (principal components) and Analyze (correlation matrix) and Display (Scree Plot) and Extract (eigenvalues over 1.0) - Continue - Rotation - under Method, choose Varimax - Continue - Scores - Save as variables - Continue - OK.
- Canonical factor analysis , also called Rao's canonical factoring, is a different method of computing the same model as PCA, which uses the principal axis method. CFA seeks factors which have the highest canonical correlation with the observed variables. CFA is unaffected by arbitrary rescaling of the data.
- Common factor analysis, also called principal factor analysis (PFA) or principal axis factoring (PAF), Common factor analysis is a form of factor analysis which seeks the least number of factors which can account for the common variance (correlation) of a set of variables, whereas the more common principal components analysis (PCA) in its full form seeks the set of factors which can account for all the common and unique (specific plus error) variance in a set of variables. PFA uses a PCA strategy but applies it to a correlation matrix in which the diagonal elements are not 1's, as in PCA, but iteratively-derived estimates of the communalities (R2 of a variable using all factors as predictors; see below).
- Common factor analysis and SEM: Common factor analysis is preferred for purposes of modeling, as in structural equation modeling (SEM). Common factor analysius accounts for the covariation among variables, whereas PCA accounts for the total variance of variables. Because of this difference, in theory it is possible under common factor analysis but not under PCA to add variables to a model without affecting the factor loadings of the original variables in the model. Widaman (1993) notes, "principal component analysis should not be used if a researcher wishes to obtain parameters reflecting latent constructs or factors." However, when commonalities are similar under common factor analysis and PCA, then similar results will follow.
- PCA vs. common factor analysis. For most datasets, PCA and common factor analysis will lead to similar substantive conclusions (Wilkinson, Blank, and Gruber, 1996). PCA is generally preferred for purposes of data reduction (translating variable space into optimal factor space), while common factor analysis is generally preferred when the research purpose is detecting data structure or causal modeling.
- Common factor analysis and SEM: Common factor analysis is preferred for purposes of modeling, as in structural equation modeling (SEM). Common factor analysius accounts for the covariation among variables, whereas PCA accounts for the total variance of variables. Because of this difference, in theory it is possible under common factor analysis but not under PCA to add variables to a model without affecting the factor loadings of the original variables in the model. Widaman (1993) notes, "principal component analysis should not be used if a researcher wishes to obtain parameters reflecting latent constructs or factors." However, when commonalities are similar under common factor analysis and PCA, then similar results will follow.
- SPSS procedure: Select Analyze - Data Reduction - Factor - Variables (input variables) - Descriptives - Under Correlation Matrix, check KMO and Anti-image to get overall and individual KMO statistics - Extraction - Method (principal components) and Analyze (correlation matrix) and Display (Scree Plot) and Extract (eigenvalues over 1.0) - Continue - Rotation - under Method, choose Varimax - Continue - Scores - Save as variables - Continue - OK.
There are different methods of extracting the factors from a set of data. The method chosen will matter more to the extent that the sample is small, the variables are few, and/or the communality estimates of the variables differ. - Principal components analysis (PCA): By far the most common form of factor analysis, PCA seeks a linear combination of variables such that the maximum variance is extracted from the variables. It then removes this variance and seeks a second linear combination which explains the maximum proportion of the remaining variance, and so on. This is called the principal axis method and results in orthogonal (uncorrelated) factors. PCA analyzes total (common and unique) variance.
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Parallel analysis (PA), also known as Humphrey-Ilgen parallel analysis. PA is now often recommended as the best method to assess the true number of factors (Velicer, Eaton, and Fava, 2000: 67; Lance, Butts, and Michels, 2006). PA selects the factors which are greater than random. The actual data are factor analyzed, and separately one does a factor analysis of a matrix of random numbers representing the same number of cases and variables. For both actual and random solutions, the number of factors on the x axis and cumulative eigenvalues on the y axis is plotted. Where the two lines intersect determines the number of factors to be extracted. Though not available directly in SPSS or SAS, O'Connor (2000) presents programs to implement PA in SPSS, SAS, and MATLAB. These programs are located at http://flash.lakeheadu.ca/~boconno2/nfactors.html.
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PROC FACTOR Statement
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- PRINCIPAL | PRIN | P
- yields principal component analysis if no PRIORS option or
statement is used or if you specify PRIORS=ONE; if you specify a PRIORS
statement or a PRIORS= value other than PRIORS=ONE,
a principal factor analysis is performed. - 2 more annotations...
Factor Analysis Using SAS PROC FACTOR
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The selection of one technique over the other is based upon several criteria. First of
all, what is the objective of the analysis? Common factor analysis and principal component
analysis are similar in the sense that the purpose of both is to reduce the original
variables into fewer composite variables, called factors or principal components.
However, they are distinct in the sense that the obtained composite variables serve
different purposes. In common factor analysis, a small number of factors are extracted to
account for the intercorrelations among the observed variables--to identify the latent
dimensions that explain why the variables are correlated with each other. In principal
component analysis, the objective is to account for the maximum portion of the variance
present in the original set of variables with a minimum number of composite variables
called principal components.Secondly, what are the assumptions about the variance in the original variables? If the
observed variables are measured relatively error free, (for example, age, years of
education, or number of family members), or if it is assumed that the error and specific
variance represent a small portion of the total variance in the original set of the
variables, then principal component analysis is appropriate. But if the observed variables
are only indicators of the latent constructs to be measured (such as test scores or
responses to attitude scales), or if the error (unique) variance represents a significant
portion of the total variance, then the appropriate technique to select is common factor
analysis. Since the two methods often yield similar results, only CFA will be illustrated
here.
Factorial ANOVA: Independent Samples: 1
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But note that in this scenario there would be
no main effects for either rows or columns(Mrow1=Mrow2=7.5 andMcol1=Mcol2=7.5),
notwithstanding that drugs A and B are obviously having an effect when
presented separately. The moral of this story is that the interpretation of the
presence or absence of main effects in a two-way ANOVA is not always simple and
straightforward. More of this later.
R: Statistical Software for Psychology Research
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a tutorial with hyperlinks
- gaotsin on 2006-10-17
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Using R for psychological research:
Statistical Computing with R: A tutorial
- a good start with R with basic information for operations, variables, data format, and plots. - gaotsin on 2006-10-17
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